PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g27600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 434aa    MW: 48274.1 Da    PI: 5.4984
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g27600genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-0593113323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 C+ Cgk F +   L  H+rtH
  CA02g27600  93 CKECGKEFFSMKALAGHLRTH 113
                 ********************9 PP

2zf-C2H215.64.4e-05122144123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C++Cgk F +   L  H+++H
  CA02g27600 122 HICEKCGKGFASMRALFGHMKVH 144
                 68*******************99 PP

3zf-C2H211.60.00084351373123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kCp C k+F++  +L  H r H
  CA02g27600 351 HKCPVCFKVFPSGQSLGGHKRAH 373
                 79**************9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.1591113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.80391118IPR007087Zinc finger, C2H2
SuperFamilySSF576672.84E-1092144No hitNo description
PfamPF139121.5E-593115IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-493121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.448122149IPR007087Zinc finger, C2H2
SMARTSM003559.9E-4122144IPR015880Zinc finger, C2H2-like
PfamPF139128.6E-4122146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4122145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576675.17E-5347375No hitNo description
PROSITE profilePS501579.182351373IPR007087Zinc finger, C2H2
SMARTSM003550.12351373IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-10351374IPR007087Zinc finger, C2H2
PROSITE patternPS000280353373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MRGHLALISA AKKQKDNSKV GSEEKEEEEA ANIHEDLSIS EQSESSTSQE KENNVSIGDD  60
GDDSIGYGLR ENPRRSWRVS DFKNCSLEMK NLCKECGKEF FSMKALAGHL RTHSKKGIEK  120
CHICEKCGKG FASMRALFGH MKVHSKRSRV DDQDSELSKQ SLSDFDNICP IRKKRSKIKY  180
KIDVNSSFSG VKESSSAISE VDEVEEAARC LLMLSVGVRD WDEYISVLEN SKNENVILES  240
ESSFHCAKGI SAADAFTVKH LSHAVFSDSG CVDDYEKNYE IAEFSDELML VNTEITKVCY  300
STDMQFENDP SSSVVMEDFP SLNSCPLKNA GVDFHPETNL LVSEPVKSKK HKCPVCFKVF  360
PSGQSLGGHK RAHYTGFTES KTKEPMVKKL DDLADNHKAF DLNTPVNAVD VGENDVELKL  420
WWVGSSDALL MSN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562269.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLK4BC220.0K4BC22_SOLLC; Uncharacterized protein
STRINGSolyc02g088670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.12e-16C2H2-like zinc finger protein